Science. Precision. Insight.
End-to-End WGS with World-Class Expertise
At CAG, we combine high-quality sequencing infrastructure with deep bioinformatics expertise to deliver a truly Sample-to-Insight experience. You get a single, accountable partner — from sample collection to publication-ready insights — without worrying about managing multiple vendors.
Comprehensive Variant Detection
Detect SNPs, InDels, CNVs, and Structural Variants in a single workflow — nothing is missed.
Full Regulatory Region Coverage
Unlike targeted panels, WGS captures promoters, enhancers, non-coding RNA, and all regulatory elements.
Clear, Visual Reports
Publication-ready figures, pathway analysis, and variant interpretation tailored to your project goals.
End-to-End Project Support
A dedicated Project Manager guides you from sample submission through final report delivery.
- Quality Control: FastQC, MultiQC, Trimmomatic
- Alignment: BWA-MEM2, Minimap2 (Long-read)
- Variant Calling: GATK4, DeepVariant, Clair3
- Annotation: ANNOVAR, SnpEff, VEP
- SV Detection: Manta, Sniffles, SVABA
- CNV Analysis: CNVnator, Control-FREEC
- Pathway & Functional Analysis
- Custom Downstream Analysis on Request
✦ Dedicated Project Manager · Secure Data Transfer · 24-hr Support
Our WGS Service Packages
Choose a plan that fits your research scope. All packages include raw data delivery, QC reports, and dedicated project support.
Basic Plan
Academic researchers and initial exploratory studies
- FastQC → Raw Data Quality Control
- Reference Genome Alignment
- SNP & InDel Variant Calling
- Basic Annotation Report
- Coverage & QC Statistics
Pro Plan
Clinicians, Pharma R&D, Oncology & Biomarker studies
- All Basic Plan analyses included
- Variant Classification (ACMG/AMP)
- Disease-specific panel overlays
- Pharmacogenomics & Biomarker analysis
Premium Plan
Advanced Plant Genomics, Biopharma, complex & grant projects
- All Pro Plan analyses included
- Fine Mapping & Gene-specific deep analysis
- Custom bioinformatics pipelines
- Publication-ready figures & pathway analysis
Supported Sequencing Platforms
We offer all three major sequencing technologies — choose individually or combine for platinum-grade results.
Illumina NovaSeq
The industry gold standard for cost-effective, high-accuracy sequencing at scale. Ideal for population genomics, SNV/InDel discovery, and large cohort studies.
PacBio Revio
Delivers 15–25 kb HiFi reads with >99.9% accuracy. Best-in-class for structural variant detection, de novo assembly, and complex genomic regions.
Oxford Nanopore (ONT)
Reads exceeding 100 kb with native epigenetic detection. Perfect for resolving repetitive regions, full-length transcripts, and real-time sequencing.
Hybrid Sequencing Available: Combine Illumina + PacBio/ONT for the highest-quality genome assemblies — ideal for complex plant genomes, structural variant studies, and de novo reference construction.
Applications We Support
From clinical rare disease to advanced agritech — WGS powers discovery across every life science domain.
Human & Clinical Research
Rare disease diagnosis, oncology profiling, and trio analysis for inherited conditions. Uncover cryptic variants missed by gene panels.
Plant & Agritech Genomics
Identify drought resistance, salt tolerance, disease resistance, and yield-improvement genes for next-generation crop breeding programs.
Microbiology & Microbial Genomics
High-resolution strain typing, AMR gene detection, and pathogen surveillance for clinical and environmental microbiology.
Drug Discovery & Biomarker Development
Identify actionable genomic biomarkers, pharmacogenomic variants, and novel drug targets to accelerate your R&D pipeline.
Population Genomics
Large-scale cohort studies to understand genetic diversity, disease architects, and evolutionary history across populations.
Have a unique project?
Our bioinformatics team can design custom pipelines for your specific research questions.
PhD Scientists & Bioinformaticians at Your Service
Every project at CAG is handled by a team of experienced PhD scientists, clinical geneticists, and certified bioinformaticians. We don't just run machines — we interpret results, troubleshoot edge cases, and work collaboratively toward your research goals.
- PhD-qualified genomics scientists on every project
- ISO-aligned lab practices & data security protocols
- Collaborative peer-review of variant interpretations
- Direct consultation availability via email & video call
Simple End-to-End Workflow
Five seamless steps from sample submission to insight-rich final report.
Sample Submission
Submit your biological sample with our guided online portal. Receive a dedicated project ID and assigned Project Manager.
DNA Extraction & Library Prep
High-quality DNA extraction and PCR-free library preparation to ensure maximum coverage uniformity and minimal bias.
Sequencing on Chosen Platform
Sequencing on your chosen platform — Illumina, PacBio, ONT, or hybrid — with rigorous run-quality monitoring.
Advanced Bioinformatics Analysis
State-of-the-art pipelines for alignment, variant calling, annotation, and custom downstream analyses per your project.
Secure Data & Report Delivery
Raw FASTQ files, analysis results, and a detailed interpretation report delivered via secure encrypted download.
Sample Requirements
Not sure about your sample quality? Contact us — we'll guide you.
Not sure which plan fits your project?
Our genomics experts will analyse your requirements and recommend the right approach — within 24 hours.
Frequently Asked Questions
Everything you need to know before starting your genome project.
Complete, Reliable WGS —
From Sample to Insight
Get expert Whole Genome Sequencing with a dedicated Project Manager, transparent timelines, and publication-ready outputs — at competitive pricing.
No commitment required · Response within 24 hours · Confidential