About Ponnaiya's CAG
Bridging Computational Biology and
Wet-Lab Expertise
Ponnaiya's Code and Genome (CAG) is a biotechnology and bioinformatics company based in Madurai, Tamil Nadu, committed to supporting researchers throughout their scientific journey. We provide integrated expertise in genomics, multi-omics, bioinformatics, artificial intelligence, and computational drug discovery, helping transform complex biological data into meaningful scientific insights.
Founded by Mr. Sathish Kumar M. Ponnaiya, CAG was established with a simple vision: to make advanced life science technologies more accessible, collaborative, and research-driven. Whether supporting an academic research project, an industrial R&D program, or a healthcare initiative, our team works closely with each client to understand their scientific objectives and deliver solutions tailored to their research needs.
Sathish Kumar M. Ponnaiya
Founder & CEO
Our Expertise
Why Choose CAG
One Team, Start to Finish
Your sample never leaves our hands — in-house sequencing and in-house computational analysis mean nothing gets lost between the bench and the report.
Best for: comprehensive omics projects, end-to-end research
AI-Assisted, Human-Verified
Every result runs through AI-accelerated pipelines, then a PhD scientist checks it before it reaches you — speed that doesn't cut corners on accuracy.
Best for: time-sensitive discovery, precision medicine
No Dataset Too Large
Large whole-genome datasets processed without infrastructure limitations — population cohorts and multi-omics studies run at full scale, on demand.
Best for: cohort studies, agricultural genomics
Ready for Clinical Scrutiny
ACMG/AMP-aligned variant classification and IND-ready dossiers — reporting built for decisions that matter, not just data delivery.
Best for: clinical research, oncology, pharma
What We Offer
Our Services
Explore our highly scannable breadth of advanced scientific solutions, tailored for researchers who know exactly what they need.
Whole Genome Sequencing
Complete genetic blueprint, structural variants included.
- 30x–100x+ coverage
- Illumina/PacBio/ONT
- SNP+SV+CNV in one workflow
Whole Exome Sequencing
Protein-coding regions, disease-causing mutations, fast.
- Cost-efficient vs WGS
- High-depth coding regions
Targeted Sequencing
High-depth panels for the genes that matter.
- Custom gene panels
- Cost-effective at scale
Clinical Exome Sequencing
Diagnostic-grade analysis for rare disease cases.
- ACMG/AMP classification
- Clinical reporting format
Plant/Animal De Novo WGS
Reference-free genome assembly for novel species.
- Hybrid long+short read
- Agritech & conservation use
Transcriptomics & RNA-Seq
Gene expression profiling and pathway-level biology.
- Differential expression
- Pathway enrichment
Have a unique project? Our team designs custom pipelines for non-standard requests.
Our Process
From Lab To Discovery
End-to-end Support.
AI-assisted.
Scientist-reviewed.
Sample Submission
Guided intake, dedicated Project ID, assigned Project Manager from day one.
Extraction & Prep
DNA/RNA extraction, protein isolation, full sample QC before a single base is read.
Sequencing / Data Generation
NGS platforms deployed per project — variant discovery, tumor profiling, or metagenomic sequencing at clinical-grade accuracy.
Bioinformatics Analysis
AI-powered custom pipelines — variant calling, docking, QSAR, transcriptomics — reviewed by PhD-level scientists before delivery.
Secure Delivery
Publication-ready reports, IND-ready dossiers, interactive visualizations, encrypted transfer, with an expert walkthrough included.
Our Methods
The Science Behind Every Breakthrough
Targeted NGS & Sequencing
Decode the variants that matter with high-depth, targeted panels — faster and more cost-effective than whole-genome for focused questions.
Computer-Aided Drug Discovery
Docking, molecular dynamics, QSAR, and pharmacophore design — cut years off your discovery timeline with ML-accelerated screening.
Multi-Omics & Transcriptomics
Genomics, transcriptomics, and epigenomics integrated into one interpretable story of your biological system.
Cloud-Scale Bioinformatics
Custom pipelines deployable on global compute clusters — scalable and reproducible, ready when your dataset is.
Oncology & Clinical Genomics
Tumor profiling and biomarker discovery, from variant calling to IND-ready reporting.
Experimental Validation
Every computational prediction validated through in-house wet-lab assays before it reaches a clinical or publication context.
Join Our Team