About Ponnaiya's CAG
Bridging Computational Biology and
Wet-Lab Expertise
Based in Madurai, Tamil Nadu, Ponnaiya's Code and Genome (CAG) is a specialized biotechnology and bioinformatics company dedicated to advancing life science research, diagnostics, and innovation. Under the leadership of Founder & CEO Sathish Kumar M. Ponnaiya, we bridge the gap between data and discovery — empowering academic researchers and global industries with precise, data-driven biological insights.
CAG was founded to eliminate the frustration of fragmented vendor handoffs. By unifying wet-lab operations and bioinformatics under one roof, we ensure no context is lost between data generation and computational analysis, differentiating us from conventional, generic sequencing vendors.
Sathish Kumar M. Ponnaiya
Founder & CEO
Our Expertise
Why Choose CAG
Dual Expertise: Wet Lab + Bioinformatics
We don't outsource either half. In-house sequencing and in-house computational analysis under one accountable team — no vendor handoffs, no lost context.
AI-Accelerated, Scientist-Reviewed
Every pipeline runs AI-assisted analysis, but nothing ships without PhD-level scientific review. Speed without sacrificing accuracy.
Cloud-Scale Compute, On-Demand
Whole-genome-scale workloads, population cohorts, and multi-omics integration — run on scalable cloud infrastructure, no capacity bottlenecks.
Clinical-Grade Precision
ACMG/AMP-aligned variant classification, IND-ready dossiers, and publication-ready reporting — built for decisions that matter, not just data delivery.
What We Offer
Our Services
Explore our highly scannable breadth of advanced scientific solutions, tailored for researchers who know exactly what they need.
Whole Genome Sequencing
Complete genetic blueprint, structural variants included.
- 30x–100x+ coverage
- Illumina/PacBio/ONT
- SNP+SV+CNV in one workflow
Whole Exome Sequencing
Protein-coding regions, disease-causing mutations, fast.
- Cost-efficient vs WGS
- High-depth coding regions
Targeted Sequencing
High-depth panels for the genes that matter.
- Custom gene panels
- Cost-effective at scale
Clinical Exome Sequencing
Diagnostic-grade analysis for rare disease cases.
- ACMG/AMP classification
- Clinical reporting format
Plant/Animal De Novo WGS
Reference-free genome assembly for novel species.
- Hybrid long+short read
- Agritech & conservation use
Transcriptomics & RNA-Seq
Gene expression profiling and pathway-level biology.
- Differential expression
- Pathway enrichment
Have a unique project? Our team designs custom pipelines for non-standard requests.
Discuss Your ProjectOur Process
From Lab To Discovery
End-to-end. AI-assisted. Scientist-reviewed.
Sample Submission
Guided intake, dedicated Project ID, assigned Project Manager from day one.
Extraction & Prep
DNA/RNA extraction, protein isolation, full sample QC before a single base is read.
Sequencing / Data Generation
NGS platforms deployed per project — variant discovery, tumor profiling, or metagenomic sequencing at clinical-grade accuracy.
Bioinformatics Analysis
AI-powered custom pipelines — variant calling, docking, QSAR, transcriptomics — reviewed by PhD-level scientists before delivery.
Secure Delivery
Publication-ready reports, IND-ready dossiers, interactive visualizations, encrypted transfer, with an expert walkthrough included.
Our Methods
The Science Behind Every Breakthrough
Targeted NGS & Sequencing
"Precision data, zero noise."
Decode the variants that matter, with turnaround times competitors can't match.
Computer-Aided Drug Discovery
"Cut years off your discovery timeline."
Docking, MD, QSAR, pharmacophore design — ML-accelerated.
Multi-Omics & Transcriptomics
"See the full biological picture."
Genomics + transcriptomics + epigenomics integrated into one interpretable story.
Cloud-Scale Bioinformatics
"Scalable. Reproducible. Ready when you are."
Custom pipelines deployable on global compute clusters.
Oncology & Clinical Genomics
"From variant to validated target."
Tumor profiling, biomarker discovery, IND-ready reporting.
Experimental Validation
"Evidence-backed discovery."
Every AI prediction validated through in-house wet-lab assays before it reaches the clinic.
Join Our Team